Installation Guide

BaColonyzer is available in PyPI for Python3. To install it, please run the following command in your terminal:

pip3 install bacolonyzer

Alternatively, if you want to play with the code and make your own modifications, you can also download the code and install BaColonyzer in the development mode:

git clone git@github.com:judithbergada/bacolonyzer.git
cd bacolonyzer
pip3 install -e .

Once you have run any of the previous options, BaColonyzer will be available in your machine. You can try:

bacolonyzer -h

Please note

BaColonyzer has been developed and tested under Linux and macOS, but it also works in Microsoft Windows.

Enjoy using BaColonyzer!